Hi Yeping,

use the spectrum command:

PyMOL> spectrum b, blue_white_red

http://pymolwiki.org/index.php/Spectrum

Cheers,
  Thomas

On 09 Dec 2013, at 11:30, sunyeping <sunyep...@aliyun.com> wrote:

> Dear all,
> 
> I want to show amino acids in a structure according to their flexibility (B 
> factor) by gradually changed colors. Can pymol do this? Thanks.
> 
> Yeping Sun
> 
> Institute of Microbiology, Chinese Academy of Sciences

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