Hello All
I am a new user to Pymol and Python.
I have a PDB Structure with single chain (A) and I have modeled 500 single
point mutants of this wild structure.
Now for each such 500 modeled structures, I would like to calculate RMSD
(ALL ATOMS) with the wild type PDB structure.
Can anybody help me with the script to automate calculation of 500 RMSD
calculations using PYMOL ?
Secondly, what threshold value of RMSD can be considered above which we can
say that the mutant structure is considerably different than the wild type ?
Thanks in advance.
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