Hi,
I'm new to Pymol and am looking at the structure of pepsinogen (PDB: 3psg).
This protein contains a 44 residue prodomain, which the pdb file says is
assigned an insertion code 'P' and labelled 1 - 44. This prodomain is cleaved
to yield pepsin (5pep), whose sequence is labelled 1 - 326. I gather Pymol
should be able to see these as separate parts of the sequence, but it instead
seems to interleave the sequences - I don't know if this affects the structure
or not? Other programs (Chimera) show the sequence as it should be
(P1-44...1-326).
Is there a way to have the sequence parts recognised in the sequence viewer?
This would make it much easier for me to manipulate these sections. Please let
me know if I haven't been clear.
Thanks,Nick.
------------------------------------------------------------------------------
Learn Graph Databases - Download FREE O'Reilly Book
"Graph Databases" is the definitive new guide to graph databases and their
applications. Written by three acclaimed leaders in the field,
this first edition is now available. Download your free book today!
http://p.sf.net/sfu/13534_NeoTech
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
