Hi,
I need to run an script based on PyMOL for a thousands of proteins. The
problem is that even when I delete all object the RAM usage keeps
increasing. I am using PyMOL 1.7 on ubuntu 14.04 (beta 2).
my script looks like this.
import __main__
__main__.pymol_argv = ['pymol','-qc']
import pymol
from pymol import cmd, stored
import glob
pdb_files = glob.glob('*.pdb')
for protein in pdb_files:
cmd.load(protein)
"some code here"
cmd.delete('all')
I tried the following.
1) removing the "some code here"
2) adding cmd.reinitialize()
3) adding cmd.set('suspend_undo', 1) (
https://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg11126.html
)
Cheers and thanks in advance.
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