Hi James, On the pymol-wiki there is a script called findseq ( http://pymolwiki.org/index.php/Findseq) That does what you want (or at least the first part of your request)
Best regards, Folmer 2014-04-05 13:29 GMT+02:00 James Starlight <jmsstarli...@gmail.com>: > Dear PyMol users! > > I'm learning of the python scripting for the solution of typical > structural bioinformatics problems. This time I'd like to integrate in > pymol simple script which will search for the selected motifs (just several > amino acids situated in adjacent positions along the sequence) and marked > selection data assuming that I'm working with ensemble of homologue > proteins having common motifs. Could someone provide me with the example of > such script included pymol syntax in code? During further steps I'd like to > improve such script for searching of motis situated in adjacent space > position in 3D pdb structures but not in its sequences. > > > Thanks for help, > > > James > > > ------------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Folmer Fredslund
------------------------------------------------------------------------------
_______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
