Thank you, Carsten,
I’ll give it a try. Do you think it may be related to memory allocation since
it does run on smaller objects?
I’ve found that upon starting APBS in PyMOL the apbs.exe file in the Program
locations window is in quotes. Removing those makes it run but still on small
objects.
Regards,
Vaheh
8-5851
From: Schubert, Carsten [JRDUS] [mailto:[email protected]]
Sent: Tuesday, April 22, 2014 5:59 PM
To: Oganesyan, Vaheh; pymol-users
Subject: RE: regarding APBS tools in PyMOL
Hi Vaheh,
my recollection is a bit hazy, but I remember having some issues with the
distributed APBS version earlier this year. Try downloading the latest APBS and
run the plug-in generated input file using the latest version from the
commandline. If that works you may have to swap the APBs binary or adjust the
path to APBS accordingly.
HTH
Carsten
From: Oganesyan, Vaheh [mailto:[email protected]]
Sent: Tuesday, April 22, 2014 9:45 AM
To: pymol-users
Subject: [PyMOL] regarding APBS tools in PyMOL
Colleagues,
The latest PyMOL version 1.7.0.3 looks like having issues with molecule size
when APBS is being used. I’m loading whole molecule consisting of ~500 aa and
APBS plugin after setting up the grid and after starting APBS run few seconds
later opens a window with message: APBS stopped working. Close Program. If I
load a portion of the molecule (and it doesn’t matter which, but should be less
than 200 aa) then it works fine.
It is being run on Intel Core i7, 64-bit with 8 GB RAM.
Did anyone see such behavior?
Regards,
Vaheh
8-5851
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