Hi Merlin -
Try limiting the distances shown to those between atoms in specific selections
using the `distance` command. For example, to show H-bonds to solvent, disable
the “my_obj_pol_conts” object created by the technical preset and use the
command:
distance my_dist, my_obj and not solvent, my_obj and solvent, cutoff=3.5
Make sure to specify a cutoff or you’ll get every pair of polar atoms between
your selections.
Hope that helps.
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
http://kong.med.nyu.edu/
On May 27, 2014, at 3:33 AM, 天元 <422294...@qq.com<mailto:422294...@qq.com>>
wrote:
Dear PyMol users!
I'm analysing polar contacts by "preset:technical". I got so many yellow bar
measurements that I can't count the number.
IS there any else way to count the number of all polar contacts ?
Thanks for help,
Merlin
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