Yeping–
You have to make a new object with the desired atoms. Try 'help extract' or
'help create'.
Also, dropbox lets you share a link to any file. The file is visible at
https://www.dropbox.com/s/j2lkd2lvu0eb2l1/surface1.tif?dl=0. I would change
your password.
-Spencer
On Wed, Aug 27, 2014 at 6:00 AM, sunyeping <sunyep...@aliyun.com> wrote:
> Dear all,
>
> Please see the figure (surface1.tif) I deposited in dropbox (
> https://www.dropbox.com/home, Account sunyep...@aliyun.com, Password:
> pymolusers). A is taken from a literature, and B is prepared by myself. In
> A, the stick representation of the side chains of residues P3, D156, R97,
> etc., is wraped around in a representation that looks like having a
> transparent stereoscopic volume. I guess this represnetation is some kind
> of surface. However, in B, although I show the surface represnetation for
> residue E63, it looks like a curved surface locate aside E63 and doesn't
> wrap around the side chain of E63 as in A. Could anyone tell me how the
> effect of the surface representation (if I am correct) was prepared?
>
> Best regards.
>
> Yeping Sun
>
> Institute of Microbiology, Chinese Academy of Sciences
>
>
>
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