Hello Amita, On Wed, 2014-09-10 09:41 EDT, Amita Rani Sahoo <[email protected]> wrote:
> Dear Pymol users, > > I want to calculate backbone RMSD of proteins having two different > conformations (For example 2RH1 and 1F88). With the align command it > calculates the executive RMSD, but i need backbone RMSD. Please advise > something. You simply need to include a selection on the command line. At the PyMOL prompt, you could type align 2hr1 & backbone, 1f88 & backbone Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Dept. of Biomedical & Molecular Sciences Botterell Hall Rm 644 Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 <[email protected]> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ Want excitement? Manually upgrade your production database. When you want reliability, choose Perforce Perforce version control. Predictably reliable. http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
