Hi Pymol users, currently I'm trying to set up the Autodock Plugin for pymol in Ubuntu 14.04 LTS, 64 bit with an Intel® Core™2 Duo CPU T9400 @ 2.53GHz × 2 and a GeForce 9650M GT/PCIe/SSE2.
I installed Pymol, MGLtools and the plugin and I can start the plugin in Pymol. But when I get to the point where I want to prepare the receptor or ligand and error comes up: /Error: 2// //<type 'exceptions.OSError'> Exception in Tk callback// // Function: <bound method Autodock.generate_receptor of <pmg_tk.startup.autodock_plugin.Autodock instance at 0x7fa2cc11ed40>> (type: <type 'instancemethod'>)// // Args: ()// //Traceback (innermost last):// // File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line 1747, in __call__// // return apply(self.func, args)// // File "/home/moritz/.pymol/startup/autodock_plugin.py", line 1897, in generate_receptor// // result, output = getstatusoutput(command)// // File "/home/moritz/.pymol/startup/autodock_plugin.py", line 63, in getstatusoutput// // p = Popen(command.split(), stdout=PIPE, stderr=STDOUT, env=env)// // File "/usr/lib/python2.7/subprocess.py", line 710, in __init__// // errread, errwrite)// // File "/usr/lib/python2.7/subprocess.py", line 1327, in _execute_child// // raise child_exception// //<type 'exceptions.OSError'>: [Errno 2] No such file or directory/ The number on top of the error message just counts how often I've tryed since the last program restart. I'm guessing something is wrong with the scripts prepare_receptor4.py and prepare_ligand4.py, since I'm guessing they are called by the plugin. Can anyone help me here please? I'm looking forward to it. Best Regards Moritz Ludwig PS: I'm not sure if that is related: On the first screen of the plugin I entered the paths manually, because when I click on the buttons in the plugin, pymol crashes.
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