Dear Pymol users! Typically when I'm looking at the ligand binding sites (present->show of the receptor-ligand.pdb complexes all receptors non-canonical residues or the different titrable forms of the standard ones (e.g HIP-protonated HIS or ASH- protonated ASN) are recognized as the ligands as well and pymol try to find hydrogen bonds or vdv contacts of these residues with its surroundings. How I could prevent it to see only on the ligand surrounding within such pdbs? What another pymol options will be useful for the ligand sites visualization?
Thanks for help, James
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