Hi Mark,
As indicated in the wiki <http://www.pymolwiki.org/index.php/Fuse> the fuse
command takes two selections as arguments. “Each selection must include a
single atom in each object. The atoms can both be hydrogens, in which case
they are eliminated, or they can both be non-hydrogens, in which case a
bond is formed between the two atoms.”
For more details about selections in PyMOL you can read here
<http://www.pymolwiki.org/index.php/Selection_Algebra>
I am not sure what you are exactly trying to do, but maybe you need some
more advanced tool like Memoir
<http://opig.stats.ox.ac.uk/webapps/memoir/php/index.php>. The modeling
capabilities of PyMOL are very limited.
Best Regards,
Osvaldo.
On Sat, Nov 15, 2014 at 9:36 PM, Mark Villar <mvil...@myune.edu.au> wrote:
Hi,
>
>
>
> Using the protein builder I’ve created 14 separate objects consisting of 7
> transmembrane (TM) helices and alternating extracellular (EL) and
> intracellular (IL) loop structures. I would like to combine these separate
> objects so that I have a straight polypeptide chain. In other words, I
> would like the last residue of the first object to connect to the first
> residue of the second object, and so on.
>
>
>
> I only started using PyMol recently so I am still unfamiliar with the menu
> options and commands. I suspect the fuse command can be used here but I’m
> just not sure about its usage and how I can get it to align with what I’m
> trying to accomplish.
>
>
>
> fuse (selection1), (selection2)
>
>
>
>
>
>
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