This unusual file has all the backbone bonds indicated with CONECT records
-- except the missing links you note. I'm guessing that PyMOL is respecting
that, and that it could be an RCSB file error.
CONECT 9606 9593
9607
CONECT 9607
9606
CONECT 9608
9609
...
CONECT 1674 1661
1675
CONECT 1675
1674
CONECT 1676
1677
What are missing there are
CONECT 9606 9608
CONECT 9608 9606
CONECT 1674 1676
CONECT 1676 1674
Jmol has the same missing links.
(forwarding to Andreas Prlic at RCSB)
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