Hi Yeping, depends on what you exactly want to measure. I recommend to try the "angle_between_domains" command from the "psico" plugin.
Example: 1) Download and unzip https://github.com/speleo3/pymol-psico/archive/master.zip 2) In PyMOL: run /path/to/psico/fullinit.py fetch 1a00, async=0 angle_between_domains chain A, chain B For other use cases, see: https://sourceforge.net/p/pymol/mailman/message/30041352/ https://sourceforge.net/p/pymol/mailman/message/33003764/ http://pymolwiki.org/index.php/Elbow_angle Hope that helps. Cheers, Thomas On 08 Jan 2015, at 22:54, Sunyeping <sunyep...@aliyun.com> wrote: > Dear all, > > I have a protein complex which contains two subunit. How can I measure the > angle between these to subunit? Thanks > > Yeping Sun > > Institute of Microbiology, Chinese Academy of Sciences -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ New Year. New Location. New Benefits. New Data Center in Ashburn, VA. GigeNET is offering a free month of service with a new server in Ashburn. Choose from 2 high performing configs, both with 100TB of bandwidth. Higher redundancy.Lower latency.Increased capacity.Completely compliant. http://p.sf.net/sfu/gigenet _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
