Hi Suzanne,
How are you calling the script? Try doing something like
pairs = polarpairs(‘sel1’, ‘sel2’)
and then
for pair in pairs: print pair
Alternative you can try with this
<http://www.pymolwiki.org/index.php/Dehydron> plugin, that returns a list
of backbone hydrogen bonds, both as a printed list and visually.
Cheers,
Osvaldo
On Mon, Feb 9, 2015 at 12:54 PM, Lapolla, Suzanne M (HSC) <
suzanne-lapo...@ouhsc.edu> wrote:
I am running this script with my structure, and the result I get is states
> how many polar pairs I have but not the location, which I thought the
> script was supposed to do. Here is the printout I get when running the
> script in pymol:
>
> Settings: cutoff=4.0angstrom angle=63.0degree
> Found 2 polar contacts
>
> Maybe something wrong with the code? Any advice/suggestions would be
> useful. Thanks in advance.
>
>
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leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
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