Dear Rajib & Yuktimmana
Molecules in PyMOL are stored as .pkl files. Those files are located inside
the
“pymol/data/chempy/fragments” folder.
I guess the only way to get a confident estimation on the feasibility of a
theoretical molecule is to perform quantum chemical computations.
Nevertheless, after building your molecule you could minimize it energy, at
least that will give you a reasonable conformation. The incentive version
of PyMOL is distributed with a built-in minimization feature, if you don’t
have the inventive version you could use the optimize
<http://www.pymolwiki.org/index.php/Optimize> plugin.
Best Regards,
Osvaldo.
On Tue, Apr 28, 2015 at 1:34 PM, bkpsusmitaa <bkpsusmi...@gmail.com> wrote:
Hello, Dr. Thomas and members,
> Is cyclododecene in the database of PyMol? How to search for a
> molecule in Pymol database? How to confirm that any particular we have
> built is feasible?
> Eager to hear,
> Regards
> Rajib & Yuktimmana
>
>
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