Hi Maze, You should be able to download the Phyre2 output and load it into pymol without issue. Phyre outputs pdb-format files that you can download and open just like from the PDB itself. As I recall, it's not intuitively obvious which link leads you to the .pdb file download from Phyre2, but look around, it's there. You'll want to save it somewhere accessible on your computer, then open it in pymol as you would any other file. Now, as to how reliable that model is will depend on many factors, especially how close of a homologue is out there for your protein.
Cheers, Shane Caldwell McGill On Tue, Jun 9, 2015 at 12:48 PM, Ndonwi, Maze <ndon...@wusm.wustl.edu> wrote: > Hi, > > May be someone else has done this before. I have a predicted PDB file from > Phyre2 (actual PDB isn't available) for this protein I'm studying. Can > Pymol run this prediction PDB file? > > Thank you for your help. I appreciate it greatly. > > Maze > > > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > > ------------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >
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