Dear Osvaldo,


I want to know whether hydrophobic interactions between 2 residues exist, thus 
I want know the distance between the 2 residues, rather than the distance 
between the atom of each of the 2 residues.


Is any sense and method we measure the distance between 2 residues?


Best regards.


Smith







At 2015-07-09 00:52:32, "Osvaldo Martin" <aloctavo...@gmail.com> wrote:

Hi Smith,


If you want to measure the distance between two residues (hydrophobic or not) 
you could choose and atom from each residue and measure the distance between 
those two atoms. Is this what you want to do, or something more complex?  Could 
you provide more details about your problem?


Cheers,

Osvaldo.



On Wed, Jul 8, 2015 at 12:33 PM, Smith Liu <smith_liu...@163.com> wrote:

Dear All,
 
Pymol has the function to measure the distance betweeen 2 atoms. In addition, 
if 2 hydrophobic residues are close enough, there will be hydrophobic 
interactions betweem them. But will you please tell me how to measure the 
distance between 2 hydrophobic residues by pymol?
 
Best regards.
 
Smith



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