http://www.pymolwiki.org/index.php/Command_Line_Options
<http://www.pymolwiki.org/index.php/Command_Line_Options>
see the -c and -r options. I also use -q
pymol -qcr script.py — arg1 arg2 arg3
> On Jul 10, 2015, at 8:44 AM, Gazal <gazal...@gmail.com> wrote:
>
> Hi,
>
> I'm trying to find the RMSD values for batch purposes. The command which I
> found works for the Pymol-command line.
> I was hoping if I could get an idea about using the python script fitting.py
> in my shell script without triggering the Pymol GUI.
>
> Thanks in advance.
>
> Gazal
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