Hi Vaheh,

Yes, figures can have transparent backgrounds
<http://www.pymolwiki.org/index.php/Ray_opaque_background>

With the GUI

Display → background → (un-tick) opaque

or using the command line

set ray_opaque_background, 0

Then if you raytrace and save the image you will get a transparent
background.

Cheers,
Osvaldo.

On Tue, Aug 4, 2015 at 1:54 PM, Oganesyan, Vaheh <oganesy...@medimmune.com>
wrote:

Hello PyMOLers,
>
>
>
> I’m wondering if the figure can have transparent background?
>
>
>
>
>
> Regards,
>
>
>
> *Vaheh Oganesyan*
>
> *MedImmune, ADPE*
>
> *www.medimmune.com <http://www.medimmune.com>*
>
>
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