Hi Karthik,

Have you tried writing a script based on the "Morphing with Ligand" example?
http://wiki.pymol.org/index.php/Morph#Morphing_with_Ligand

Cheers,
  Thomas

On 02 Oct 2015, at 09:50, Karthik Rajasekar <karthik.rajase...@bioch.ox.ac.uk> 
wrote:

> Hello all,
> 
> I am trying to morph two structures using the commercial version of 
> Pymol. Pymol looses heteroatoms (zinc in my case) while morphing. Is 
> there any way around this?
> 
> (I tried replacing zinc with water and linking it to the protein using 
> CONECT - didn't work)
> 
> Thanks for your help.
> Karthik

-- 
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.


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