Hi Tsjerk,

As a matter of fact the replacement of atoms by cubes is possible with cubes.py. However, this applet doesn't suit my project.
Indeed, I would like to get a script that describe your second guess!

D
Le 11/12/15 17:12, Tsjerk Wassenaar a écrit :

Hi Damien,

Do you mean replacing the atoms by cubes, or by binning the atoms on a 3D grid and show these cubes if filled?

Cheers,

Tsjerk

On Fri, Dec 11, 2015 at 4:51 PM, Damien Clavel <dcla...@ibs.fr <mailto:dcla...@ibs.fr>> wrote:

    Good evening pymol users,

    I would like to represent a protein with a superimposed 3D grid of
    cubes.
    I tried the applet cubes.py but it is not appropriate for me...

    So my goal is to control the size of the cubes that will be part
    of such grid.
    In addition, it will be really great if I could even control the
    color (shaded) of each cubes.

    Does anyone could help me?

-- *Damien CLAVEL*
    Cellphone +33 7 81 66 61 70 <tel:%2B33%207%2081%2066%2061%2070>
    Landline +33 4 57 42 87 35 <tel:%2B33%204%2057%2042%2087%2035>
    PhD student at Laboratoire Chimie Physique (UP Sud)
                    and Institut de Biologie Structurale (EPN Campus)
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--
Tsjerk A. Wassenaar, Ph.D.


--
*Damien CLAVEL*
Cellphone +33 7 81 66 61 70
Landline   +33 4 57 42 87 35
PhD student at Laboratoire Chimie Physique (UP Sud)
                and Institut de Biologie Structurale (EPN Campus)
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Laboratoire de Chimie Physique <http://www.lcp.u-psud.fr/rubrique.php3?id_rubrique=266/> Institut de Biologie Structurale <http://www.ibs.fr/spip.php?lang=en>
    Bul. 350 Campus Orsay                 EPN Campus
    15, Av. Jean Perrin                         6, rue Jules Horowitz
    F-91405 ORSAY Cedex                 F-38000 GRENOBLE

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