You can automate generating the bump objects:
split_states *,prefix=split_
for n in cmd.get_object_list("(split_*)"): show_bumps(n, "bump_"+n);
However, unfortunately the bump cgo objects don't seem to be able to be
combined into a multi-state object (e.g. with `for n in
cmd.get_object_list("(split_*)"):
cmd.create("bumps","bump_"+n,target_state=-1)`). Thus you might have to
generate your movie using some python loops to enable/disable the bumps for
each frame, if you want to automate it.
-Spencer
On Thu, Jan 28, 2016 at 11:25 AM, ccp4 pymol <ccp4.py...@gmail.com> wrote:
> Dear Spencer
>
> Thank you for the suggestion. Well, I actually wanted to do it as a part
> of making a movie, so would have liked some automation.
>
> Thank you.
>
> Best Regards
> Priyan
>
> On Thu, Jan 28, 2016 at 2:39 PM, Spencer Bliven <spencer.bli...@gmail.com>
> wrote:
>
>> Priyan–
>>
>> You can use the split_states
>> <http://pymolwiki.org/index.php/Split_states> command to divide it into
>> multiple objects, then run the script on each state individually.
>>
>> -Spencer
>>
>> On Thu, Jan 28, 2016 at 3:45 AM, ccp4 pymol <ccp4.py...@gmail.com> wrote:
>>
>>> Hi
>>>
>>> I have a multi-state object loaded in PyMOL which represents transition
>>> of a domain from one orientation to the other. I tried using
>>> "show_bumps.py" to bring up clashes during the transition but the cgo that
>>> is written out shows clashes only for the first state. Am I doing something
>>> wrong or should we pass additional commands to show clashes for all states.
>>> Kindly post your replies with help/suggestions in this regard.
>>>
>>> Thank you
>>>
>>> Best Regards
>>> Priyan
>>>
>>>
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