Showing metal ions (and FES clusters etc) as spheres would also be useful.
Thanks, Abhinav Abhinav Kumar, PhD Senior Scientist, Bioinformatics Intrexon, Inc. 329 Oyster Point Blvd., South San Francisco, CA 94080 (650) 597-4072 | aku...@intrexon.com ________________________________________ From: Thomas Holder [thomas.hol...@schrodinger.com] Sent: Monday, February 08, 2016 8:51 AM To: Ivan Vulovic; Schubert, Carsten [JRDUS] Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] auto_show_cartoon or similar Hi Ivan and Carsten, I can take "auto_show_cartoon" as a feature request. It's trivial to implement. What also would be nice: automatically showing sticks for ligands. e.g. corresponding to the "not polymer" or the "organic" selection. Thoughts? Cheers, Thomas On 08 Feb 2016, at 09:07, Schubert, Carsten [JRDUS] <cschu...@its.jnj.com> wrote: > Hi Ivan, > > you could either try to overload the “load” function in Pymol (not sure this > is supported) or write your own custom load function under a different name, > which loads the protein, assigns the name of the object, hides lines and > shows the cartoon. > > Sorry, this is a rather generic answer but should point you in the right > direction. > > Cheers, > > Carsten > > From: Ivan Vulovic [mailto:i...@uw.edu] > Sent: Saturday, February 06, 2016 8:18 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] auto_show_cartoon or similar > > Hello > > Is there a way to make cartoon the default representation, something akin to > "auto_show_lines", but for cartoon? There was some dicussion of this in 2010 > (link below) but I haven't found anything more recent that does what I'd like. > > http://www.mail-archive.com/pymol-users%40lists.sourceforge.net/msg07734.html > > Thanks > Ivan -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ________________________________ CONFIDENTIAL TRANSMISSION - This message, including any attachments, is confidential and may be privileged. If you are not the intended recipient, please delete it without further distribution and reply to the sender that you have received the message in error. ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
