Hi. I think
align 4mt1 & chain A, 3aob & chain B
should work.
Amin.
On 2016-02-25 17:02, Mohsen Chitsaz wrote:
> Hi Julian,
>
> I have two homotrimer proteins, i.e. 3aob and 4mt1. I want to align chain A
> of 4mt1 to chain B of 3aob. How to tell Pymol to align a specific chain or
> part of a protein, in my case chain A of 4mt1, to a specific chain or part of
> another protein, in my case chain B of 3aob?
>
> Cheers
>
> Mohsen
>
> FROM: Mohsen Chitsaz
> SENT: Wednesday, 24 February 2016 11:17 PM
> TO: 'Julian Heinrich' <jul...@joules.de>
> CC: pymol-users@lists.sourceforge.net
> SUBJECT: RE: [PyMOL] Appending a pdb file
>
> Hi Julian,
>
> Many Thanks for your help. It worked.
>
> Cheers
>
> Mohsen
>
> FROM: julian.heinr...@gmail.com [mailto:julian.heinr...@gmail.com] ON BEHALF
> OF Julian Heinrich
> SENT: Monday, 22 February 2016 8:24 PM
> TO: Mohsen Chitsaz <mohsen.chit...@flinders.edu.au>
> CC: pymol-users@lists.sourceforge.net
> SUBJECT: Re: [PyMOL] Appending a pdb file
>
> Hi Mohsen,
>
> if you want to superimpose structures, have a look at the align command:
>
> http://pymolwiki.org/index.php/Align [4]
>
> Cheers,
>
> Julian
>
> On Thu, Feb 18, 2016 at 10:47 PM, Mohsen Chitsaz
> <mohsen.chit...@flinders.edu.au> wrote:
>
>> Hi
>>
>> In order to superimpose two protein sequences, I am trying to append a pdb
>> file to an existing protein sequence, which I have already opened in PyMol.
>> The append function is not working in my PyMol. Could someone help me with
>> this please.
>>
>> Cheers
>>
>> Mohsen
>>
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