Hi Smith -
`Align` takes selections as arguments, so something like the following should
work.
align protA and chain A+B+C, protB and chain E+F+G
You could also use `super` or `cealign` instead of align, although with
cealign, you should reverse the order of the arguments to achieve the same
result.
Cheers,
Jared
On Apr 12, 2016, at 5:11 AM, Smith Liu
<smith_liu...@163.com<mailto:smith_liu...@163.com>> wrote:
Dear All,
Suppose my protein A PDB contains chian A, B, C, D, and my protein B PDB
contains chain E, F, G, H, I want to align all protein A without chain D, with
all protein B without chain H, will you please tell me the align command?
Smith
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