Dear Pymol users! I am studying protein-protein assosiation using 2 different proteins as test case by means of variety of computational methods. For my particular caseI need to compare binding poses emerged as the result of protein-protein docking (ensemble 1: which consists of 20 snapshots according to docking ranking) as well as MD simulation (ensemble 2: which consists of 10 snapshots each of which represents binding pose which has been established during long MD run). Loading those two ensembles in pymol as 2 different models (in NMR-like model format) I need to performs some analysis to find some shared trends in each of them e.g RMSD of the distances between common residues-pairs found in contact map analysis or something else. What are most trivial suggestions might be in that particular case?
Thanks for the suggestions! James ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
