There is a cartoon variant too, although everything will look like a loop
set cartoon_trace_atoms, on
show cartoon, polymer
On Wed, Oct 26, 2016 at 12:27 AM, Yuxing Liao <
yuxing.l...@utsouthwestern.edu> wrote:
> Hi Mohsen,
>
> The PDB file of 3B5D only contains CA atoms, so most rendering like
> cartoon fails. You could try to visualize it by "set ribbon_trace_atoms, 1"
> and then show it as ribbon.
>
> Yuxing
>
> -----Original Message-----
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> ------------------------------
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> Message: 4
> Date: Tue, 25 Oct 2016 21:34:01 +0000
> From: Mohsen Chitsaz <mohsen.chit...@flinders.edu.au>
> Subject: [PyMOL] difficulty opening EmrE protein (pdb: 3B5D) in Pymol
> To: "pymol-users@lists.sourceforge.net"
> <pymol-users@lists.sourceforge.net>
> Message-ID:
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> apcprd03.prod.outlook.com>
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>
> Hi everyone,
>
> Can someone please assist me opening this pdb file? I am trying to open
> EmrE protein (pdb: 3B5D) in Pymol a and show it as cartoon representation,
> but it opens up as many little cross signs seem to be corresponding to CA
> atoms. When I try to preset it pretty or any other preset options, it
> disappears. The command "show cartoon" is not doing anything on it.
>
> Cheers
> Mohsen
>
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