This can be done using normal python file i/o:
f=open("ss.txt","w")
iterate n. CA, f.write(resi + ':' + ss+"\n")
f.close()
On Fri, Jan 13, 2017 at 10:38 AM, Academic Research <ac.resea...@icloud.com>
wrote:
> That would be good as well, How?
>
> keep in mind, my protein is synthetic, it is not from the PDB database,
> and the .pdb file only contains ATOMS, no header or anything else.
>
> On Jan 13, 2017, at 12:37 pm, Albert <mailmd2...@gmail.com> wrote:
>
> I think you can obtain it from your Linux terminal
>
>
>
> On 01/13/2017 10:34 AM, Academic Research wrote:
>
> Pymol Professionals I need your help,
>
> I have the following command:
>
> iterate n. CA, print resi + ':' + ss
>
> I use this command in pymol to print out each residue number and its
> corresponding secondary structure. The command prints out the result in
> pymol itself.
>
> My question is: *How can I save the output from this command into a file?*
>
> AC Research
>
>
>
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