I have a script for calculating principal moments of inertia and displaying
them as axes: https://github.com/sbliven/principal_axes
If you look over the code it should be pretty easy to draw the first two
axes as a cgo plane instead of as arrows.
-Spencer
On Tue, Jan 17, 2017 at 3:38 PM, Tsjerk Wassenaar <tsje...@gmail.com> wrote:
> Hi Vitaly,
>
> You have several options, but if the loops are nicely bent, the best is
> probably doing PCA on the coordinate sets of the loops and calculate the
> angle between the smallest eigenvectors.
>
> Is that enough information? Do you insist on drawing the planes?
>
> Cheers,
>
> Tsjerk
>
> On Jan 17, 2017 15:11, "chemocev marker" <jirivit...@gmail.com> wrote:
>
>> Hi
>> I am analyzing the dynamics of the loop and interested to define the loop
>> as plane. Is there is a way in the pymol, if I can define the loop as plane
>> and can measure the angle between these plane in different model??
>>
>> Best
>> J. Vitali
>>
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