Hi Himesh, On the PyMOL command line, this should do the trick:
# load desmond trajectory load sample-out.cms, mytraj load_traj sample_trj/clickme.dtr, mytraj # save multi-model PDB file save multi.pdb, mytraj, state=0 See also: https://pymolwiki.org/index.php/Load_Traj#Examples https://pymolwiki.org/index.php/Save Cheers, Thomas On 25 Jan 2017, at 03:46, Himesh Makala <him...@sastra.ac.in> wrote: > Hello, > > I would like to convert the simulation output [which was performed by using > Desmond (maestro)] into .PDB format. It will be very helpful if anyone help > me out with the same. > > Thanks a lot, > > Himesh > > -- > > Thanks & Regards, > > Himesh Makala -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
