Hi Daniel, Apparently, no b-factors were assigned, or the CA positions in all states are identical.
Here is a similar script, maybe that works better for you (uses “rmsf2b” from PSICO): run https://raw.githubusercontent.com/speleo3/pymol-psico/master/psico/editing.py fetch 1nmr, async=0 rmsf2b 1nmr spheroid 1nmr as cartoon cartoon putty spectrum b, blue_white_red, 1nmr & guide Hope that helps. Cheers, Thomas > On Apr 27, 2017, at 4:11 PM, Daniel Munoz Escudero <dmun...@unal.edu.co> > wrote: > > Hello, > > I found in this repository http://muralab.org/~cmura/PyMOL/ an script > (average3d.py) to perform the sausage representation in PyMOL. Although it > works perfectly good with the pdbs given in the examples, I couldn't get the > same results for my molecule. After performing all the RMSD calculations (I > have 51 states in my molecule), the message: " Extrude-Warning: invalid putty > settings (division by zero)", appears right after the command: > cmd.spectrum('b','blue_white_red','yesfit_ALL and name CA') > > I really don't know what the problem is. Has anyone had a similar problem and > could help me out? > > Thank you very much, > > Daniel. -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
