> > Message: 4 > Date: Wed, 24 May 2017 16:45:23 +0800 (GMT+08:00) > From: ??? <liuyanc...@sibcb.ac.cn> > Subject: [PyMOL] show surface on pymol > To: pymol-users@lists.sourceforge.net > Message-ID: > <1c6ade2.11d04.15c39a1cba6.coremail.liuyanc...@sibcb.ac.cn> > Content-Type: text/plain; charset="gbk" > > > Dear Madem/Sir, > > I am a user of Pymol software. Pymol facilitates me a lot during my study. I > have a problem and maybe need your help. I want to show surface of a ligand > in which there is a methylated lysine. Other residues are OK except the > methylated lysine. Could you help me to deal with this problem? Should I > install any plugin that can recognize molecules like methylated lysine or > anything? Thanks a lot. > > Yanchao Liu > > Shanghai Institute of Biochemistry and Cell Biology. > > Shanghai Institutes for Biological Sciences. > > Chinese Academy of Sciences. > > 320 Yueyang Road ,Shanghai 200031,China.
Dear Yanchao Liu Try “set surface_mode,1” With the default surface mode 0, heteroatom are not included in the surface, with surface mode 1 they are. Of course, if you have other heterosexual-compounds like ligands and buffer components in the same object, you might first want to either remove these or extract them to a different object. Annemarie ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
