Hello,
This might be a naive question as I am new to PyMol.
I recently installed MacPyMol and followed the instructions on Plugins -
PyMOLWiki to install the plugin Caver.
After successfully installing Caver, I loaded the trajectory I want to analyze
to compute tunnels, I get the following messages:
*** Caver will be called using command ***java -Xmx500m -cp
"/Users/shivangi/Downloads/caver_3.0_plugin/linux_mac/Caver3/lib" -jar
"/Users/shivangi/Downloads/caver_3.0_plugin/linux_mac/Caver3/caver.jar" -home
"/Users/shivangi/Downloads/caver_3.0_plugin/linux_mac/Caver3" -pdb
"/Users/shivangi/caver_output/3/inputs" -conf
"/Users/shivangi/caver_output/3/inputs/config_2017-07-08-13-53.txt" -out
"/Users/shivangi/caver_output/3"******************************************Update
of your Python or PyMOL is recommended, some error messages may not be visible
with current version./Users/shivangirun
/Users/shivangi/caver_output/3/pymol/view_plugin.pyPyMOL>run
/Users/shivangi/caver_output/3/pymol/view_plugin.pyTraceback (most recent call
last): File
"/Applications/PyMOLX11Hybrid.app/Contents/pymol/modules/pymol/parsing.py",
line 533, in run_file execfile(file,global_ns,local_ns) File
"/Applications/PyMOLX11Hybrid.app/Contents/pymol/modules/pymol/parsing.py",
line 527, in execfile co = compile(pi.file_read(filename), filename, 'exec')
File
"/Applications/PyMOLX11Hybrid.app/Contents/pymol/modules/pymol/internal.py",
line 327, in file_read raise pymol.CmdException('failed to open file "%s"' %
finfo)CmdException: Error: failed to open file
"/Users/shivangi/caver_output/3/pymol/view_plugin.py"
Along with these messages a window pops up which says update Java JDK, which I
did, restarted my computer.On checking with Safari browser, it tells me I have
the correct version of Java on my computer.
I do have python3 installed on my mac.
I am very confused as to how to make caver work on Mac.
Kindly guide.
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Plugins - PyMOLWiki
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Regards,Shivangi
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