Enrique,
I don’t know a lot about AutoDock, but I do know a lot about python. That error
comes from using a new versions of numpy (1.14) that does not have old numeric
with it anymore (deprecated in 1.9).
You can do a few things. Run the script within pymol which uses a earlier
release of numpy. rOr you could downgrade your numpy to 1.8 by using
Pip install ‘numpy==1.8’ —force-reinstall
But I’d recommend you do that in an environment. This is the perfect time for
virtual environments
https://realpython.com/python-virtual-environments-a-primer/
<https://realpython.com/python-virtual-environments-a-primer/>
> On Jun 12, 2018, at 2:36 PM, Enrique Ordaz <en.ordaz...@gmail.com> wrote:
>
> Dear everyone,
> I have recently installed the open-source Pymol 1.7.x on Ubuntu 16.04
> sudo-apt-get install pymol
>
> I then added the Pymol-script-repo which includes the Autodock/Vina plugin
> and ADT. This has worked well for me in the past. However on this new
> installation I keep getting the following error:
>
> Batch:
> /home/enrique/Pymol-script-repo/modules/ADT/AutoDockTools/Utilities24/prepare_receptor4.py
> -r /home/enrique/pymol/receptor.1crl.pdb -o
> /home/enrique/pymol/receptor.1crl.pdbqt -A checkhydrogens
> Traceback (most recent call last):
> File
> "/home/enrique/Pymol-script-repo/modules/ADT/AutoDockTools/Utilities24/prepare_receptor4.py",
> line 10, in <module>
> import MolKit.molecule
> File "/home/enrique/Pymol-script-repo/modules/ADT/MolKit/molecule.py", line
> 25, in <module>
> from mglutil.util import misc
> File "/home/enrique/Pymol-script-repo/modules/ADT/mglutil/util/misc.py",
> line 19, in <module>
> import numpy.oldnumeric as Numeric
> ImportError: No module named oldnumeric
>
> Hope someone can help me or point me in the right direction.
>
> Best regards,
> Enrique Ordaz
>
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