Please be more specific with your questions. Which atoms? Which Ser? How
did you remove chain B, etc?
For some reason only the N is modeled for the C-terminal Ser in both chains
of 2J3S; if that's what you're talking about, then the issue is with the
deposited PDB file, and likely the atoms were not visible in electron
density. If you're talking about other Ser residues then you'll have to
give more information.
Best wishes
Kevin
--
Kevin Jude, PhD
Structural Biology Research Specialist, Garcia Lab
Howard Hughes Medical Institute
Stanford University School of Medicine
Beckman B177, 279 Campus Drive, Stanford CA 94305
Phone: (650) 723-6431 <javascript:void(0);>
On Wed, Aug 1, 2018 at 8:03 AM Mohammad Goodarzi <mohammad.goda...@gmail.com>
wrote:
> Hello,
>
> I have a protein that i get from PDB https://www.rcsb.org/structure/2J3S
> then I try to remove the chain B, and all water etc except the chain A.
> it causes that I miss some atoms on the SER. Can you please advise how to
> deal with it?
>
> Thanks
> Mohammad
>
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