Hi Divya, I can confirm that slices don't work properly with some map formats (those which define a transformation matrix).
What's the file format (file extension) of your map? Cheers, Thomas > On Aug 15, 2018, at 7:38 PM, Divya Kaur Matta <dma...@gradcenter.cuny.edu> > wrote: > > Dear all, > > > I would like to use the "Isomesh" and "Slice" command for the protein I am > working on to get the electrostatic potential map of that protein. For that , > it requires map. I have got Delphi map for that. When I use the commands > below, I got the mesh that aligns with the atoms of the pdb, however for > slice, it is not aligned with the atoms. I would like to have a slice plane > for my protein. > > > For isomesh, > > isomesh map_n20, phimap, -20.0 ; color red, map_n20 > > isomesh map_p20, phimap, 20.0 ; color blue, map_p20 > > For slice, > > I did actions, show slice(default) > > Please find attached images for the slice I got. > > > Thank you! > > Best Regards, > > Divya K. Matta > Ph.D. Student in Chemistry -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
