Hi Markus and Joel, Would something like this address your needs?
# show metal contacts distance metalcoordination, metals, (donors acceptors), 3.5, label=0 # show metals as semi-transparent spheres show spheres, metals set sphere_transparency, .5 # show the metal neighbors as lines show lines, byres (all within 3.5 of metals) The "metals" selector was added in PyMOL 1.6.1. Cheers, Thomas > On Aug 24, 2018, at 1:29 AM, Joel Tyndall <joel.tynd...@otago.ac.nz> wrote: > > Hi Markus, > > I am not aware of this function in pymol but would be interested in one being > developed. > > J > > -----Original Message----- > From: Markus Heller <mhel...@cdrd.ca> > Sent: Friday, 24 August 2018 6:28 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Display metal coordination > > Hi all, > > Is there a way to display the coordination of a metal, e.g. Zn2+ or Mg2+, > that doesn't require manual selection of atoms and showing of bonds? > > I wasn't able to find anything online ... > > Thanks > Markus -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
