Dear all, Could you please check this figure at the following link? https://drive.google.com/file/d/1Uh9JRh7x0sjv-zGp_0ZKPc1cnWotkZA0/view?usp=sharing
The structure in blue in this figure is prepared from chain A of pdb id 4gms. Some residues are highlighted and look sharp ( as indicated in the figure: 130-loop, 150-loop, 190-helix and 220-loop, and the corresponding residues are: residues 134-138, 155-163, 188-195, 221-228, respectively), while other part of the structure look blurry. I wish to repeat this visual effect but don't know how. I try to select the residues and use "set transparency" command: set transparency, 0.8, sele but it doesn't work. Could anyone help me figure it out? With sincere thanks.
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