Hi Adam -
The characters between the object names and the chain IDs are the segment IDs.
You can remove them by setting them to the empty string using `alter`:
alter all, segi=""
Hope that helps.
Cheers,
Jared
On March 22, 2019 at 12:14:46 PM, h. adam steinberg
(h.adam.steinb...@gmail.com) wrote:
On Mar 21, 2019, at 1:41 AM, Kevin Jude <kj...@stanford.edu> wrote:
The DNA in 1CGP is made up of two annealed half sites, so there are four chain
assignments for the two strands. If you want to display it as intact DNA, after
adding the linking phosphate you can use the alter command to make the chains
continuous. HTH.
--
Kevin Jude, PhD
Structural Biology Research Specialist, Garcia Lab
Howard Hughes Medical Institute
Stanford University School of Medicine
Beckman B177, 279 Campus Drive, Stanford CA 94305
Phone: (650) 723-6431
On Wed, Mar 20, 2019 at 12:18 PM h. adam steinberg <h.adam.steinb...@gmail.com>
wrote:
Hi All,
I opened 1cgp and the DNA has two breaks in the nucleic acid backbone. After I
fixed those two breaks (add in the correct atoms and join them) how do I get
the cartoon of the DNA to be complete? PyMOL still creates the cartoon with the
breaks.
Thanks!
Adam
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