Hi Arthur, The origin of rotation will become the focal point. So all you have to do is:
PyMOL> origin resn DUD The blur will look better if you increase the sample size, e.g. samples=20. Cheers, Thomas > On May 15, 2019, at 9:50 AM, sunyeping via PyMOL-users > <pymol-users@lists.sourceforge.net> wrote: > > Dear all, > > I have a protein-ligand complex and I wish to make the protein looks blur but > keep the ligand clear and sharp with pymol. I find a "focalblur" script > (https://pymolwiki.org/index.php/FocalBlur) which seems to be able to do > this. However I can get the fancy effect illustrated in the examples of the > wiki for this script. With the follow command: > > FocalBlur aperture=2,samples=10,ray=1,width=1000,height=1000 > > > I just make the ligand rather the the protein become blur (Please see the > image at https://drive.google.com/open?id=1qzXDLzVyxI85sJ8H6Zhv8pd8Cq7rA18U, > and the pse file used to make this image is availabe at > https://drive.google.com/open?id=1Gjrl5ePifadWEK8-AZYVXY7yX07kOLF7). > > Could anyone help with this？ What does the argument "aperture" do? How to > control which part become blur? Is there better way to make the ligand blur? > > Thank you very much! > > Arthur > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
