Dear Stéphane, by default, the cartoon representation takes its color from the color of the c-alpha atoms of your protein. However, you can override this default and assign a specific color to the cartoon representation of a given selection by:
set cartoon_color, color, (selection) e.g. set cartoon_color, red, resi 1-60 best regards Annemarie Honegger ____________________________________________________________ Dr. Annemarie Honegger Dept. of Biochemistry Zürich University Winterthurerstrasse 190 8057 Zürich Switzerland e-mail: honeg...@bioc.uzh.ch phone: +41 44 635 55 62 fax: +41 44 635 57 12 > > Message: 4 > Date: Thu, 6 Jun 2019 10:26:29 +0000 > From: ABEL Stephane <stephane.a...@cea.fr> > To: "h. adam steinberg" <h.adam.steinb...@gmail.com> > Cc: "pymol-users@lists.sourceforge.net" > <pymol-users@lists.sourceforge.net> > Subject: Re: [PyMOL] colored secondary structure of two chains with > different colors > Message-ID: > <3e39b768bb199548ab18f7289e7534af4b042...@exdag0-b0.intra.cea.fr> > Content-Type: text/plain; charset="Windows-1252" > > Hi Adam > > OK I can colored each chain with different colors. But it is not exactly what > I want. Indeed in the figure* > > - the AA are in sticks with the different colors for each atom --> I can do > this > - the beta sheet in the monomer are in red and blue ---> I can "not" do this > even if I use your suggestion > > I would like in two representations at the same time and the necessary > commands for adding them in a script. > ript. > > *https://cdn.rcsb.org/images/rutgers/ma/1mag/1mag.pdb-500.jpg > > Thank you again. > > St?phane > > > ---------------------------------------------------------- > St?phane Abel, Ph.D. > Commissariat ? l?Energie Atomique et aux Energies Alternatives > Centre de Saclay DSV/ISVFJ/SB2SM > Bat 528, Office 138C > Gif-sur-Yvette, F-91191 FRANCE > Phone (portable) : +33 6 49 37 70 60 > ________________________________________ > De : h. adam steinberg [h.adam.steinb...@gmail.com] > Envoy? : mercredi 5 juin 2019 21:36 > ? : ABEL Stephane > Objet : Re: [PyMOL] colored secondary structure of two chains with different > colors > > If you change your mouse / selection mode to chains, you can then click on > one of the monomers and choose a color for it from the (sale) in the right > side panel drop down menu. Then click on the other monomer and do the same. > > Is that what you are asking for? > >> On Jun 5, 2019, at 1:23 PM, ABEL Stephane <stephane.a...@cea.fr> wrote: >> >> Hello all >> >> I have a pdb structure of gramicidin A dimer (PDB 1MAG) and I would like to >> color the beta sheets of each monomer with different colors (for instance >> in red and blue colors) in Figure >> >> https://cdn.rcsb.org/images/rutgers/ma/1mag/1mag.pdb-500.jpg >> >> How to do this ? >> >> Thank you >> >> St?phane >> >> >> >> _______________________________________________ >> PyMOL-users mailing list >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> Unsubscribe: >> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > > > > ------------------------------ > > > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > ------------------------------ > > End of PyMOL-users Digest, Vol 157, Issue 5 > ******************************************* _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
