Hi James, pdb_use_ter_records works in PyMOL 2.3.0, but not in previous versions (was broken and then removed). See https://pymolwiki.org/index.php/pdb_use_ter_records
Cheers, Thomas > On Jun 25, 2019, at 10:25 AM, James Starlight <jmsstarli...@gmail.com> wrote: > > Dear Pymol Users! > > I need to process input PDB via pymol (this time no need to do it via > no-gui mode!!) to remove chain id from PDB. > > I am using alter command to do it with the following syntax > #rename chain A to phantom chain :-) > alter (chain A),chain='' > > the problem that in my initial PDBs there are many TER records (e.g. > to separate protein from ligand etc), which should be keeped after > such post-processing in the form of original PDB (with chain A). > > I have tried to do this before saving of the PDB > get pdb_use_ter_records > > however, as the result, all the TER records were removed from the > processed pdb. How I could fix it? > > Many thanks in advance! > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
