Hi Martin, Would it be possible to share those files with me?
Thanks, Thomas > On Nov 28, 2019, at 6:00 PM, Rosellen, Martin <martin.rosellen...@ucl.ac.uk> > wrote: > > Dear all, > > I have issues loading Amber trajectories. First, I load the the topology > like this: > > load WT.prmtop, WT, 1, top > > output: > > ObjectMolecule: Attempting to read Amber7 topology file. > TOPStrToCoordSet: Warning: can't currently image a truncated octahedron... > > > load_traj WT.trj, WT > > output: > > ObjMolLoadTRJFile-Error: Failed to read expected coordinate value. > This traj. does not match the loaded parameter/topology file. > Likely cause: either the atom count or the periodic box settings > are inconsistent between the two files. > > > My guess is that pymol somehow changes the atom count because it cannot > image the truncated box which causes the error with the trajectory. > > I was thinking about putting the trajectory in a PDB but that would be a > file of <20GB in the end. > > Any comment, positive or negative, would be very much appreciated. > > cheers > > Martin > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
