Something is fishy... as I do not expect this to happen. I have never
experienced this problem.
I made different types of mistakes resulting in such a phenomenon.
* using a for loop and in the command, loading the ligand, I did not
inserted the loop variable into the file name
(e.g. I used lig_1.pdb instead of "lig_%i.pdb" % ix)
* it was not with vina (difficult to imagine this situation), but once I
generated a set of pdb files with the same coordinates
On the other hand:
https://pymolwiki.org/index.php/Sync
On 4/30/20 5:09 AM, leifepeter...@sbcglobal.net wrote:
I am writing png images for many docked ligands but all the png files
have the same image – even though the file names are different for the
ligand_out.pdbqt files. So PyMol is getting ahead of itself and
quickly looping through all the code and dumping the same image but
with different files names since the image buffer never caught up.
Thus, I will need to programatically wait for each png to be
generated, and once the png command is finished, I can move to the
next ligand.
What command can be used to instruct PyMol to finish its processing
before taking on new commands, either that or e.g. 5 sec pause? I will
need to use this command right after the png command.
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