Hi. I'm working with PyMol's Python API from the terminal. I would like to
color the molecules in my session by atom using the command util.cbac(). I
want them in cyan because I'm deleting the two molecules involved and
reopening the files with those molecules several times inside a loop. My
first attempt was this:
import pymol2
sess = pymol2.PyMOL()
sess.start()
sess.cmd.load("./cyclodextrin_rec.mol2", object = "rec")
sess.cmd.load("./cyclodextrin_lig.mol2", object = "lig")
sess.cmd.util.cbac("all")
After that last command, I get the following warning message: "PyMOL not
running, entering library mode (experimental)". It is supposed to work, but
I don't get the molecules colored by atom. I also tried with the following
last command instead of sess.cmd.util.cbac("all"):
import pymol
pymol.util.cbac("all")
But still doesn't work. Any clue? Thx.
Antonio Serrano
--
"Este mensaje es privado y confidencial y se dirige exclusivamente a su
destinatario. Si usted recibe este mensaje por error, no debe revelar,
distribuir o copiar este e-mail. Por favor, comuníquelo al remitente y
borre el mensaje y los archivos adjuntos de su sistema. No hay renuncia a
la confidencialidad ni a ningún privilegio a causa de una transmisión
errónea o por mal funcionamiento".
"This message is private and
confidential and it is intended exclusively for the addressee. If your
receive this message by mistake, you should not disseminate, distribute or
copy this e-mail. Please inform the sender and delete the message and
attachments from your system. No confidentiality or any privilege regarding
the information is waived or lost by any mistransmission or malfunction".
No me imprimas si no es necesario.Don't print me unless it's necessary.
_______________________________________________
PyMOL-users mailing list
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Unsubscribe:
https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
