Hi Isreal, I converted the script with 2to3 using the command in a terminal:
2to3 pucker.py -w The modified script ran as advertised on the Wiki in pymol 2.4.0 on both DNA and RNA fetched as cif (new default) or as pdb. Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology, College of Medicine University of Oklahoma Health Sciences Center From: Israel Serrano [israels...@gmail.com] Sent: Friday, February 12, 2021 3:54 AM To: pymol-users@lists.sourceforge.net Subject: [EXTERNAL] [PyMOL] Pucker calculations Hello PyMOL users, I used to run the script https://urldefense.proofpoint.com/v2/url?u=http-3A__pucker.py&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6MIjRV8jE5Xx0XTtn_34wRf6thWBe8MHvfmU7U9wCSE&s=oqRpFfO3IQkNfDPi0Q2w2tIOxTadxDYLOGY88h3JOtI&e= (https://urldefense.proofpoint.com/v2/url?u=https-3A__pymolwiki.org_index.php_Pucker&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6MIjRV8jE5Xx0XTtn_34wRf6thWBe8MHvfmU7U9wCSE&s=RPuMEUTeEl1SDk6fnvNjFrmWxHcAWeKBa9rst15Incs&e= ) in the old version of PyMOL. It's a script to calculate the sugar pucker information of the nucleic acid structures. Unfortunately, it not working in PyMOL 2.4.1, I guess because is written in Python 2. I have tried to run the 2to3 to update the script, but I get some errors. Has anybody been able to run this script in PyMOL 2.4? Thanks, Israel _______________________________________________ PyMOL-users mailing list Archives: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.mail-2Darchive.com_pymol-2Dusers-40lists.sourceforge.net&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6MIjRV8jE5Xx0XTtn_34wRf6thWBe8MHvfmU7U9wCSE&s=bEEZ8HchRHWc5px7QgZDeQRKlFlLUc75ef35yQFKMAk&e= Unsubscribe: https://urldefense.proofpoint.com/v2/url?u=https-3A__sourceforge.net_projects_pymol_lists_pymol-2Dusers_unsubscribe&d=DwICAg&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=6MIjRV8jE5Xx0XTtn_34wRf6thWBe8MHvfmU7U9wCSE&s=1LM3hOHxeB1hRxLzk3OUAC5Ax20R2nAuyURJBWgbhLo&e= _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
