The columns of your pdb aren't properly aligned; you have extra spaces where they shouldn't be. You can fix it in a text editor. See https://www.wwpdb.org/documentation/file-format-content/format33/sect9.html for more information. hth Kevin
-- Kevin Jude, PhD (he/him/his) Structural Biology Research Specialist, Garcia Lab Howard Hughes Medical Institute Stanford University School of Medicine Beckman B177, 279 Campus Drive, Stanford CA 94305 Phone: (650) 723-6431 On Fri, Jun 25, 2021 at 7:45 AM Nazi Ebrahimi <naziebrahim...@gmail.com> wrote: > Hello, > Please see the attached. Pymol shows one of the oxygens too big. > > Can you help me with this? > > Nazi > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
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