Hi Neena, When you render out of PyMOL using the button (not the command line), it just renders out the view window. Therefore if you make the helix fill the entire viewport rectangle, you will effectively render out a ‘cropped” image.
If you turn on transparency (in the background setting), you will no longer have a background to worry about as PyMOL will render just the helix on transparency. Adam > On Jul 23, 2021, at 11:57 AM, Neena Susan Eappen <neenasusan...@gmail.com> > wrote: > > Hello PyMOL users, > > Let me clarify my question. Shown below is one example figure. There is no > way to crop any images on Origin graphing software. For this figure, I > cropped PyMOL peptide image files on word document and then inserted in > Origin graph. This is time consuming. > Is there a way to crop on PyMOL? > > <image.png> > Any insight would be appreciated, > > Thank you, Neena > > On Jul 22, 2021, at 5:43 PM, Neena Susan Eappen <neenasusan...@gmail.com > <mailto:neenasusan...@gmail.com>> wrote: > >> Hello PyMOL users, >> >> I have some issues exporting images from PyMOL into a data analysis software >> called OriginLab (https://www.originlab.com/ <https://www.originlab.com/>). >> If there is anyone in this mail list who integrates figures from PyMOL into >> Origin, please email me. I need some insights for data representation. >> >> Many thanks, >> Neena > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
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