Hi all, I am wondering how PyMOL recognises and display secondary structure (like alpha helix) when selecting the ‘Cartoon’ function. I have attached an image of my molecule where only certain regions are displayed in the cartoon representation whereas there is helical propensity throughout my molecule as seen in the image. Hence, how does PyMOL decide on the secondary structure features?
Thank you so much! Any suggestions/advice on where to look will be greatly appreciated! Jessica Lim
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